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  1. nprcgenekeepr::exampleNprcgenekeeprConfig
    Example nprcgenekeepr configuration file (loadable)
    json| rda| rds
    character
  2. nprcgenekeepr::examplePedigree
    Example pedigree object (from ExamplePedigree.csv)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3694 x 13
  3. nprcgenekeepr::finalRpt
    Genetic-value report list prior to ranking
    json| rda| rds
    list
  4. nprcgenekeepr::focalAnimals
    Focal animal IDs from examplePedigree
    csv| xlsx| json| ndjson| rda| rds
    data.frame|327 x 1
  5. nprcgenekeepr::lacy1989Ped
    Small hypothetical pedigree (Lacy 1989)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7 x 5
  6. nprcgenekeepr::lacy1989PedAlleles
    Gene-drop alleles for lacy1989Ped (5000 iterations)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14 x 0
  7. nprcgenekeepr::ped1Alleles
    Gene-drop alleles example (baboon pedigree)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|554 x 6
  8. nprcgenekeepr::pedDuplicateIds
    Example studbook with a duplicated record
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9 x 5
  9. nprcgenekeepr::pedFemaleSireMaleDam
    Example studbook with sex-mismatched parents
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8 x 5
  10. nprcgenekeepr::pedGood
    Valid example studbook (no QC errors)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8 x 5
  11. nprcgenekeepr::pedInvalidDates
    Example studbook with invalid birth dates
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8 x 5
  12. nprcgenekeepr::pedMissingBirth
    Example studbook missing the birth date column
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8 x 4
  13. nprcgenekeepr::pedOne
    Raw pedigree-file fragment for testing (5 columns)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8 x 5
  14. nprcgenekeepr::pedSameMaleIsSireAndDam
    Example studbook with a male as both sire and dam
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8 x 5
  15. nprcgenekeepr::pedSix
    Raw pedigree-file fragment for testing (7 columns)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8 x 7
  16. nprcgenekeepr::pedWithGenotype
    Pedigree with simulated genotypes (from qcPed)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|280 x 12
  17. nprcgenekeepr::pedWithGenotypeReport
    Genetic-value report for pedWithGenotype
    json| rda| rds
    list
  18. nprcgenekeepr::qcBreeders
    Potential breeder IDs (29 baboons)
    json| rda| rds
    character
  19. nprcgenekeepr::qcPed
    Example quality-controlled baboon pedigree
    csv| xlsx| json| ndjson| rda| rds
    data.frame|280 x 8
  20. nprcgenekeepr::qcPedGvReport
    Genetic-value report for qcPed
    json| rda| rds
    list
  21. nprcgenekeepr::rhesusGenotypes
    Rhesus genotypes (two haplotypes per animal)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|31 x 3
  22. nprcgenekeepr::rhesusPedigree
    Obfuscated rhesus pedigree object
    csv| xlsx| json| ndjson| rda| rds
    data.frame|375 x 8
  23. nprcgenekeepr::smallPed
    Hypothetical 17-animal pedigree
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17 x 6
  24. nprcgenekeepr::smallPedTree
    Pedigree tree built from smallPed
    csv| json| rda| rds
    list
  25. nprcgenekeepr::speciesGestation
    Per-species reproductive parameters
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14 x 4